Members

Dr. rer. nat. Oliver Rübel

Publications (26)

2010

G.H. Weber, S. Ahern, E.W. Bethel, S. Borovikov, H.R. Childs, E. Deines. C. Garth, H. Hagen, B. Hamann, K.I. Joy, D. Martin, J. Meredith, Prabhat, D. Pugmire, O. Rübel, B. Van Strallen, K. Wu
Recent Advances in VisIt: AMR Streamlines and Query-Driven Visualization,

D.M. Ushizima, C.G.R. Geddes, E. Cormier-Michel, E.W. Bethel, J. Jacopsen, Prabhat, O. Rübel, G.H. Weber, P. Messmer, B. Hamann, H.Hagen
Automated detection and analysis of particel beams in laser-plasma accelerator simulations; in Machine Learning, In-Tech, Vienna, Austria, pages 367-389, ISBN ISBN 978-953-307-033-9, Feb.2010

Rübel, O., Weber G.H., Huang M.-Y., Bethel E.W., Biggin M.D., Fowlkes C.C., Luengo Hendriks C.L., Keränen S.V.E., Eisen M.B., Knowles D.W., Malik J., Hagen H. and Hamann B.
Integrating Data Clustering and Visualization for the Analysis of 3D Gene Expression Data, IEEE/ACM Transactions on Computational Biology and Bioinformatics, published online May.2008, in print vol.7, number 1, pages 64--79, March.2010.

O Rübel, Sean Ahern, E. Wes Bethel, Mark. D Biggin, Hank Childs, Estelle Cormier-Michel, Angela DePace, Michael B. Eisen, Charless C. Fowlkes, Cameron G. R. Geddes, Hans Hagen, Bernd Hamann, Min-Yu Huang, Soile V. E. Keränen, David W. Knowles, Cris L. Lue
Coupling Visualization and Data Analysis for Knowledge Discovery from Multi-dimensional Scientific Data." In Elsevier, Procedia Computer Science, Volume 1, Issue 1, Proceedings of International Conference on Computational Science, ICCS 2010, May 2010

2009

K. Wu, S. Ahern, E. W. Bethel, J. Chen, H. Childs, E. Cormier-Michel, C. Geddes, J. Gu, H. Hagen, B. Hamann, W. Koegler, J. Lauret, J. Meredith, P. Messmer, E. Otoo, V. Perevoztchikov, A. Poskanzer, Prabhat, O. Rübel, A. Shoshani, A. Sim, et al.
"FastBit: Interactively Searching Massive Data." In Journal of Physics Conference Series, Proceedings of SciDAC 2009.

E. W. Bethel, C. Johnson, S. Ahern, J. Bell, P.-T. Bremer, H. Childs, E. Cormier-Michel, M. Day, E. Deines, T. Fogal, C. Garth, C. G. R. Geddes, H. Hagen, B. Hamann, C. Hansen, J. Jacobsen, K. Joy, J. Krüger, J. Meredith, P. Messmer, G. Ostrouchov, et al
Occam’s Razor and Petascale Visual Data Analysis, Journal of Physics Conference Series, Proceedings of SciDAC 2009

E. Wes Bethel, Oliver Rübel, Prabhat, Kesheng Wu, Gunther H. Weber, Valerio Pascucci, Hank Childs, Ajith Mascarenhas, Jeremy Meredith, and Sean Ahern
Modern Scientific Visualization is More than Just Pretty Pictures." In: Numerical Modeling of Space Plasma Flows: Astronum-2008 (Astronomical Society of the Pacific Conference Series).

Weber,G. H., Rübel, O., Huang, M.-Y., DePace, A. H., Fowlkes,C. C., Keränen, S. V. E., Luengo Hendriks, C. L., Hagen, H., Knowles,D. W., Malik, J., Biggin, M. D., and Hamann, B.
Visual exploration of three-dimensional gene expression using physical views and linked abstract views. IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), Vol.6, issue 2, pp. 296-309, April-June 2009.

Rübel, O., Geddes, C.G.R., Cormier-Michel, E., Wu, K., Prabhat, Weber, G. H., Ushizima, D. M., Messmer, P., Hagen, H., Hamann, B., Bethel, E. W.
Automatic Beam Path Analysis of Laser Wakefield Particle Acceleration Data; IOP Computational Science & Discovery

2008

Ushizima D.M., Rübel, O., Prabhat, Weber G,H., Bethel E.W., Aragon C.R., Geddes C.G.R., Cormier-Michel E. Hamann B., Messmer P., Hagen H.
Automated analysis for detecting beams in laser wakefield simulations, Seventh International Conference on Machine Learning and Applications (ICMLA'08), San Diego, CA, 11-13 Dec. 2008

Rübel, O., Prabhat, Wu K., Childs H., Meredith J. Geddes C.G.R., Cormier-Michel E., Ahern S. Weber G.H., Messmer P., Hagen H., Hamann B. and Bethel E.W.
High Performance Multivariate Visual Data Exploration for Extremely Large Data, SuperComputing 2008 (SC08), Austin TX, November 15-21, 2008

Fowlkes C.C., Luengo Hendriks C.L., Keränen S.V.E., Weber G.H., Rübel O. , Huang M.-Y., Chatoor S., Simirenko L., Henriquez C., Beaton A., Weiszmann R., Celniker S., Eisen M.B., Hamann B., Knowles D.W., Biggin M.D. and Malik J.
A quantitative spatio-temporal atlas of gene expression in the Drosophila blastoderm, Cell, vol. 133, no. 2, pp. 364-374, April 2008

E. Bethel, O. Rübel, G. H. Weber, B. Hamann, H. Hagen
Visualization and Analysis of 3D Gene Expression Data. Lawrence Berkeley National Laboratory, 2008, url: http://escholarship.org/uc/item/4189x84k.

Oliver Rübel , Kesheng Wu , Hank Childs , Jeremy Meredith , Peter Messmer , Hans Hagen , Bernd Hamann , E. Wes Bethel
Application of High-performance Visual Analysis Methods to Laser Wakefield Particle Acceleration Data,

Bethel, E. Wes, Oliver Rübel, Prabhat, Kesheng Wu, Gunther H. Weber, Valerio Pascucci, Hank Childs, Ajith Mascarenhas, Jeremy Meredith, and Sean Ahern.
Modern Scientific Visualization is More than Just Pretty Pictures; Numerical Modeling of Space Plasma Flows: Astronum-2008 (Astronomical Society of the Pacific Conference Series)

2007

Huang, Min-Yu, Rübel, O., Weber, G.H., Luengo Hendriks, C.L., Biggin, M.D., Hagen, H. and Hamann, B.
Segmenting gene expression patterns of early-stage Drosophila embryos; o appear in: Linsen, L., Hagen, H. and Hamann, eds., Mathematical Methods for Visualization in Medicine and Life Sciences, Springer-Verlag, Heidelberg, Germany.

Bethel, E. WesCo-authors: E.W., Johnson, C., Aragon, C, Prabhat, Rübel O., Weber, G.H., Pascucci, V., Childs, H., Bremer, P.-T., Whitlock, B., Ahern, S., Meredith, J., Ostrouchov, G., Joy., K., Hamann, B., Garth, C., Cole, M., Hansen, C., Parker, S.,
SciDAC Visualization and Analytics Center for Enabling Technologies -- Strategy for Petascale Visual Data Analysis Success; CTWatch Quarterly

2006

Rübel, O., Weber, G.H., Keraenen, S.V.E., Fowlkes, C.C., Luengo Hendriks, C.L., Simirenko, L., Shah, N.Y., Eisen, M.B., Biggin, M.D., Hagen, H., Sudar, J.D., Malik, J., Knowles, D.W. and Hamann,
PointCloudXplore: Visual analysis of 3D gene expression data using physical views and parallel coordinates, in Data Visualization 2006 (Proceedings of EuroVis 2006), Eurographics Association, Aire-la-Ville, Switzerland, pp. 203-210

Dissertations

Rübel, Oliver
Linking Automated Data Analysis and Visualization with Applications in Developmental Biology and High-energy Physics, Nov. 2009